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List of databases and bioinformatics tools developed by researchers in Singapore, description on the content and functions of the databases/tools, and their host institution/organization.

List of mirror databases based in Singapore.


Name

Description

Source

Mirror Host

BLAST db

Latest release of the BLAST databases (e.g nr, nt, est, etc) in FASTA format

NCBI

NUS-BIC

BLAST db

Latest release of the BLAST databases (e.g nr, nt, est, etc) - NCBI

NCBI

NUS-BIC

BLOCKS

Protein conserved regions database

NCBI 

NUS-BIC

DDBJ

 DNA Data Bank of Japan

NIG 

NUS-BIC

EMBL

 European Molecular Biology Laboratory

EMBL 

NUS-BIC

Ensembl

 Automatically annotated genome database at EBI, UK

Ensembl 

NUS-BIC

Enzyme

 Enzyme database

 EBI

NUS-BIC

euGenes

 Eukaryote Genes Summary Databank

 euGenes

NUS-BIC

Genbank

NIH sequence database. Collection of all publicly available DNA sequence

NCBI

NUS-BIC

Gene Ontology

Geneontology database

Geneontology

NUS-BIC

GenPept

Contains mostly unannotated translations of GenBank sequences

NCICRF

NUS-BIC

IMGT

ImMunoGeneTics Database

EBI

NUS-BIC

InterPro

Integrated protein domains and functional sites database

EBI

NUS-BIC

KEGG

KEGG pathway database, Kyoto, Japan

KEGG

NUS-BIC

NCBI Genomes

Genomic database of various organisms

NCBI

NUS-BIC

Pfam

Protein families database at Sanger Centre, UK

EBI

NUS-BIC

PIR

The protein identification resource database

EBI

NUS-BIC

PRINTS

Compendium of protein fingerprints

UMBER

NUS-BIC

Prosite

Protein families and domains database

EBI

NUS-BIC

Rebase

Restriction enzyme database at New England Biolabs, USA

EBI

NUS-BIC

RefSeq

Reference Sequence database

NCBI

NUS-BIC

SwissProt

High level of annotation, low level of redundancy protein sequence database

EBI

NUS-BIC

Taxonomy

Taxonomy database

NCBI

NUS-BIC

TrEMBL

Computer annotated supplement of Swiss-Prot. Contains translations of EMBL nucleotide sequence entries not yet integrated in Swiss-Prot

EBI

NUS-BIC

Unigene

Non-redundant set of gene-oriented clusters database

 NCBI

NUS-BIC

UTR

Untranslated regions of eukaryotic mRNAs database

 UTR

NUS-BIC


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